VcfToExcel

Last commit

convert a vcf to something excel. I'm not proud about this. I was asked to do this but please, do not use excel, do not use this tool.

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar vcf2xls  [options] Files

Usage: vcf2xls [options] Files
  Options:
    --empty
      Fill Empty cells with that string.
      Default: <empty string>
    --header
      Print header description
      Default: false
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    -G, --one-genotype-per-line
      Print one genotype per line
      Default: false
    -o, --output
      Output file. Optional . Default: stdout
    --version
      print version and exit

Keywords

vcf
table
tsv

Creation Date

20260314

Source code

https://github.com/lindenb/jvarkit/tree/master/src/main/java/com/github/lindenb/jvarkit/tools/vcf2xls/VcfToExcel.java

Contribute

Issue Tracker: http://github.com/lindenb/jvarkit/issues
Source Code: http://github.com/lindenb/jvarkit

License

The project is licensed under the MIT license.

Citing

Should you cite vcf2xls ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030