CNVValidatorServer

Review files generated by coverageplotter

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar cnvvalidatorserver  [options] Files

Usage: cnvvalidatorserver [options] Files
  Options:
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    --port
      server port.
      Default: 8080
    --version
      print version and exit

Keywords

• server
• xml
• rdf
• cnv

Creation Date

20220818

Source code

https://github.com/lindenb/jvarkit/tree/master/src/main/java/com/github/lindenb/jvarkit/tools/validatorserver/CNVValidatorServer.java

Contribute

• Issue Tracker: http://github.com/lindenb/jvarkit/issues
• Source Code: http://github.com/lindenb/jvarkit

License

The project is licensed under the MIT license.

Citing

Should you cite cnvvalidatorserver ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030

input

input a set of html+svg generated with coverageplotter or one file with the suffix '.list' containing the path to the files.

example:

java -jar dist/jvarkit.jar cnvvalidatorserver path/*.html 

or

find /path/to -type f -name "*.html" > review.list
java -jar dist/jvarkit.jar cnvvalidatorserver review.list

Screenshot

https://twitter.com/yokofakun/status/1563132159417757696