SwingVcfJexlFilter
Filter VCF using Java Swing UI and JEXL/Javascript expression
Usage
This program is now part of the main jvarkit
tool. See jvarkit for compiling.
Usage: java -jar dist/jvarkit.jar swingvcfjexl [options] Files
Usage: swingvcfjexl [options] Files
Options:
-h, --help
print help and exit
--helpFormat
What kind of help. One of [usage,markdown,xml].
--version
print version and exit
Keywords
- vcf
- visualization
- swing
- jexl
- javascript
Creation Date
20220413
Source code
Contribute
- Issue Tracker: http://github.com/lindenb/jvarkit/issues
- Source Code: http://github.com/lindenb/jvarkit
License
The project is licensed under the MIT license.
Citing
Should you cite swingvcfjexl ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md
The current reference is:
http://dx.doi.org/10.6084/m9.figshare.1425030
Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030
Example
java -jar dist/swingvcfjexl.jar src/test/resources/rotavirus_rf.vcf.gz
Screenshot
https://twitter.com/yokofakun/status/1514287386410336259