QQPlotter

plot QQplot
Usage
This program is now part of the main jvarkit tool. See jvarkit for compiling.
Usage: java -jar dist/jvarkit.jar qqplotter [options] Files
Usage: qqplotter [options] Files
Options:
--column-label
column label for 'name of the point'
Default: <empty string>
-p, --column-pvalue
column label for 'p-value'
Default: P
--column-url
column label for 'url of the point'
Default: <empty string>
-d, --delim
column separator as a java regexe
Default: [ ]+
--disable-log10
data are already -log10(x), so do not apply -log10
Default: false
-h, --help
print help and exit
--helpFormat
What kind of help. One of [usage,markdown,xml].
-o, --output
Output file. Optional . Default: stdout
--version
print version and exit
-w, -width
image width
Default: 1000
Keywords
- qqplot
- gwas
- statistics
Creation Date
20250324
Source code
Contribute
- Issue Tracker: http://github.com/lindenb/jvarkit/issues
- Source Code: http://github.com/lindenb/jvarkit
License
The project is licensed under the MIT license.
Citing
Should you cite qqplotter ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md
The current reference is:
http://dx.doi.org/10.6084/m9.figshare.1425030
Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030