QQPlotter

Last commit

plot QQplot

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar qqplotter  [options] Files

Usage: qqplotter [options] Files
  Options:
    --column-label
      column label for 'name of the point'
      Default: <empty string>
    -p, --column-pvalue
      column label for 'p-value'
      Default: P
    --column-url
      column label for 'url of the point'
      Default: <empty string>
    -d, --delim
      column separator as a java regexe
      Default: [    ]+
    --disable-log10
      data are already -log10(x), so do not apply -log10
      Default: false
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    -o, --output
      Output file. Optional . Default: stdout
    --version
      print version and exit
    -w, -width
      image width
      Default: 1000

Keywords

  • qqplot
  • gwas
  • statistics

Creation Date

20250324

Source code

https://github.com/lindenb/jvarkit/tree/master/src/main/java/com/github/lindenb/jvarkit/tools/qqplot/QQPlotter.java

Contribute

License

The project is licensed under the MIT license.

Citing

Should you cite qqplotter ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md

The current reference is:

http://dx.doi.org/10.6084/m9.figshare.1425030

Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030

Example