Jvarkit
  • jvarkit
  • addlinearindextobed
  • allelefreqcalc
  • almostsortedvcf
  • applyvelocity
  • backlocate
  • bam2fastq
  • bam2haplotypes
  • bam2mnv
  • bam2raster
  • bam2sql
  • bam2svg
  • bam2wig
  • bam2xml
  • bamclip2insertion
  • bamcmpcoverage
  • bamleftalign
  • bamliftover
  • bammatrix
  • bamphased01
  • bamrenamechr
  • bamslicebed
  • bamstats04
  • bamstats05
  • bamtile
  • bamwithoutbai
  • barcodegenerator
  • basecoverage
  • batchigvpictures
  • bcftoolsmergebest
  • bed2hilbert
  • bed2vcf
  • bed2xml
  • bedcluster
  • bedclustername
  • bedindextabix
  • bedliftover
  • bedmergecnv
  • bednonoverlappingset
  • bedremovebed
  • bedrenamechr
  • bedstats
  • bgen2vcf
  • bgenview
  • bigwigmerge
  • bigwigtview
  • bioalcidae
  • bioalcidaejdk
  • biostar103303
  • biostar105754
  • biostar130456
  • biostar139647
  • biostar145820
  • biostar154220
  • biostar160470
  • biostar165777
  • biostar170742
  • biostar172515
  • biostar173114
  • biostar175929
  • biostar178713
  • biostar214299
  • biostar234081
  • biostar234230
  • biostar251649
  • biostar322664
  • biostar332826
  • biostar336589
  • biostar352930
  • biostar3654
  • biostar398854
  • biostar404363
  • biostar480685
  • biostar489074
  • biostar497922
  • biostar59647
  • biostar76892
  • biostar77288
  • biostar77828
  • biostar78285
  • biostar81455
  • biostar84452
  • biostar84786
  • biostar86363
  • biostar86480
  • biostar90204
  • biostar9462889
  • biostar9469733
  • biostar9501110
  • biostar9556602
  • biostar95652
  • biostar9566948
  • biostar9608448
  • blast2sam
  • blastfilterjs
  • blastmapannots
  • blastn2snp
  • breakdancer2vcf
  • builddbsnp
  • cmpbams
  • cmpbams4
  • cmpbamsandbuild
  • cnvpanelofnormal
  • cnvtview
  • cnvvalidatorserver
  • commbams
  • convertliftoverchain
  • copynumber01
  • coveragegrid
  • coveragematrix
  • coverageplotter
  • coverageserver
  • cytoband2svg
  • dict2bed
  • dict2r
  • dict2vcf
  • dict2xml
  • dragenbnd2inv
  • evadumpfiles
  • extendrefwithreads
  • fasta2vcf
  • fastqgrep
  • fastqrevcomp
  • fastqshuffle
  • findallcoverageatposition
  • findavariation
  • findgvcfsblocks
  • findhtsfiledict
  • findnewsplicesites
  • fixvcfmissinggenotypes
  • gatkhc
  • gff2fasta
  • gff2kg
  • gff3upstreamorf
  • goutils
  • groupbygene
  • gtexrs2qtl
  • gtf2bed
  • gtf2gff
  • gtf2xml
  • gtfliftover
  • gtfretrocopy
  • gwascatalog2bed
  • haplogroupcasectrl
  • howmanybamdict
  • htsfreemarker
  • ibd2vcf
  • illuminadir
  • indexcov2vcf
  • jbrowse2
  • json2xml
  • kg2bed
  • kg2fa
  • kg2gff
  • knowndel
  • knownretrocopy
  • liftover2svg
  • lowresbam2raster
  • manhattan
  • mantamerger
  • mapuniprot
  • mergeblastxml
  • mergesplittedblast
  • minicaller
  • minigenotyper
  • mkminibam
  • msa2vcf
  • multiqcpostproc
  • ncbitaxonomy2xml
  • nfhashtools
  • ngsfilessummary
  • oboutils
  • optimizefisher
  • pcrclipreads
  • pcrslicereads
  • plinkfixvcf
  • plotbcftoolsstats
  • plotmosdepth
  • plotsashimi
  • prettysam
  • pubmed404
  • pubmedauthorgraph
  • pubmedcodinglang
  • pubmeddump
  • pubmedgender
  • pubmedgraph
  • pubmedmap
  • pubmedorcidgraph
  • qqplotter
  • reduceblast
  • ref2html
  • regeniebedannot
  • regeniefunctionalannot
  • regeniemakeannot
  • regenieslidingannot
  • repairfastq
  • rnaseqpolya
  • sam2json
  • sam2psl
  • sam2tsv
  • sam4weblogo
  • samaddpi
  • samclipindelfraction
  • samedict
  • samextractclip
  • samfindclippedregions
  • samfixcigar
  • samgrep
  • samjdk
  • samrmdupnames
  • samslop
  • samviewwithmate
  • scanlabguru
  • scanretrocopy
  • scansv
  • setfile2bed
  • setfilecluster
  • setfilefrombed
  • setfiletools
  • shiftbam
  • shiftvcf
  • sortsamrefname
  • sortvcfoninfo
  • splitvcf
  • starretrocopy
  • sv2fasta
  • sv2svg
  • svcasescontrols
  • swingbamcov
  • swingbamview
  • swingindexcov
  • swingplinkselectcluster
  • swingregenie
  • swingvcfjexl
  • swingvcfview
  • testng
  • texbam
  • translategff3
  • tssenrich
  • tview
  • ukbbdump
  • ukbiobanksamples
  • uniprot2svg
  • uniprotfilterjs
  • variantsinwindow
  • vcf2bam
  • vcf2hilbert
  • vcf2intervals
  • vcf2r
  • vcf2rdf
  • vcf2table
  • vcf2xls
  • vcf2xml
  • vcf4igv
  • vcfallele2symbolic
  • vcfallelebalance
  • vcfancestralalleles
  • vcfbed
  • vcfbedsetfilter
  • vcfbigbed
  • vcfbigwig
  • vcfbraiding
  • vcfburdencnv
  • vcfburdenfisherh
  • vcfburdenmaf
  • vcfburdenslidingwindow
  • vcfbyindex
  • vcfcadd
  • vcfcluster
  • vcfcombinetwosnvs
  • vcfcomposite
  • vcfconcat
  • vcfdistancevariants
  • vcffilterbyliftover
  • vcffiltergenes
  • vcffiltergtf
  • vcffilterjdk
  • vcffilterso
  • vcfflatten
  • vcfgatkeval
  • vcfgenesplitter
  • vcfgnomad
  • vcfgnomadsv
  • vcfgrantham
  • vcfgroupbypop
  • vcfhead
  • vcfisec
  • vcfliftover
  • vcfmerge
  • vcfmovefilterstoinfo
  • vcfmulti2one
  • vcfmulti2oneallele
  • vcfmulti2oneinfo
  • vcfnearest
  • vcfpar
  • vcfpeekaf
  • vcfpeekvcf
  • vcfphased01
  • vcfpolyx
  • vcfrebase
  • vcfregulomedb
  • vcfrenamechr
  • vcfsamplesprs
  • vcfscanupstreamorf
  • vcfserver
  • vcfsetdict
  • vcfshuffle
  • vcfsortjdk
  • vcfspliceai
  • vcfsplitbed
  • vcfsplitnvariants
  • vcfsplitvep
  • vcfspringfilter
  • vcfstats
  • vcfstats2
  • vcfstrech2svg
  • vcfsvannotator
  • vcftabixml
  • vcftail
  • vcftbi2bed
  • vcftrio
  • vcfukbb
  • vcfwindowsplitter
  • wescnvsvg
  • wgscoverageplotter
  • wib2bedgraph
  • xcontaminations
  • xsltstream
Jvarkit
  • blast2sam
  • Edit on GitHub
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