PlotBcftoolsStats

Last commit

Plot bcftools stats output

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar plotbcftoolsstats  [options] Files

Usage: plotbcftoolsstats [options] Files
  Options:
    --categories, --phenotypes
      A tab delimited file (sample)<tab>(category)
    --format
      output format.
      Default: PDF
      Possible Values: [PDF, PNG, SVG]
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    -o, --output
      Output file. Optional . Default: stdout
    --prefix
      output prefix.
      Default: <empty string>
    --sections
      Limit to those sections. eg. 'QUAL,PSC,PSI'. Comma-separated values. 
      Ignore if empty. Inverse the selection if it starts with '^'.
      Default: <empty string>
    --version
      print version and exit
    -D
      set some css style elements. '-Dkey=value'. Undocumented.
      Syntax: -Dkey=value
      Default: {}