JVARKIT
Author : Pierre Lindenbaum Phd. Institut du Thorax. Nantes. France. Version : 8ebd2be2 Compilation : 20240424122145 Github : https://github.com/lindenb/jvarkit Issues : https://github.com/lindenb/jvarkit/issues
Usage
java -jar jvarkit.jar [options]
or
java -jar jvarkit.jar <command name> (other arguments)
Options
- --help show this screen
- --help-all show all commands, including the private ones.
- --version print version
Compilation
Requirements / Dependencies
- java compiler SDK 17. Please check that this java is in the
${PATH}
. Setting JAVA_HOME is not enough : (e.g: https://github.com/lindenb/jvarkit/issues/23 )
Download and Compile
$ git clone "https://github.com/lindenb/jvarkit.git"
$ cd jvarkit
$ ./gradlew jvarkit
The java jar file will be installed in the dist
directory.
Contribute
- Issue Tracker: http://github.com/lindenb/jvarkit/issues
- Source Code: http://github.com/lindenb/jvarkit
License
The project is licensed under the MIT license.
Citing
Should you cite jvarkit ? https://github.com/mr-c/shouldacite/blob/master/should-I-cite-this-software.md
The current reference is:
http://dx.doi.org/10.6084/m9.figshare.1425030
Lindenbaum, Pierre (2015): JVarkit: java-based utilities for Bioinformatics. figshare. http://dx.doi.org/10.6084/m9.figshare.1425030