DictToR

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convert a SAM dictionary from vcf,sam,bam,dict, etc.. to R code functions.

Usage

This program is now part of the main jvarkit tool. See jvarkit for compiling.

Usage: java -jar dist/jvarkit.jar dict2r  [options] Files

Usage: dict2r [options] Files
  Options:
    -h, --help
      print help and exit
    --helpFormat
      What kind of help. One of [usage,markdown,xml].
    -o, --out
      Output file. Optional . Default: stdout
    --prefix
      prefix name. If empty try to use build name, if it is available
      Default: <empty string>
    --regex
      keep chromosomes matching that regular expression
      Default: (chr)?[0-9XY]+
    --version
      print version and exit